RESOURCES

Reading material for those who want to learn more about proteomics.

Proteomic Search Tools

Protein Prospector (UCSF)

Mascot (Matrix Science)

MaxQuant (Cox Lab)

Scaffold (Proteome Software)

Proteome Discoverer (Thermo Fisher)

pFind (He Lab)

MetaMorpheus (Smith Lab)

Data Independent Acquisition (DIA) Tools

Skyline (MacCoss Lab)

Scaffold DIA (Proteome Software)

EncyclopeDIA (MacCoss Lab)

Cross-linking MS (CL-MS) Tools

pLink (He Lab)

XlinkX (Heck Lab)

ProXL (Davis Lab)

Proteome Processing and Analysis Tools

NormalyzerDE (Jakob Willforss)

Metaboanalyst (Xia Lab)

Morpheus (Broad Institute)

Jvenn (J.C. Oliveros)

Perseus (Cox Lab)

Panther Gene Ontology